There are numerous processes that can be used to clean up waste waters depending on the type and extent of contamination. Most wastewater is treated in industrial-scale wastewater treatment plants (WWTPs) which may include physical, chemical and biological treatment processes. However, the use of septic tanks is widespread in rural areas, serving up to one quarter of the homes in the U.S. The most important aerobic treatment system is the activated sludge process, based on the maintenance and recirculation of a complex biomass composed by micro-organisms able to degrade the organic matter carried in the wastewater. Anaerobic processes are widely applied in the treatment of industrial wastewaters and biological sludge. Some wastewater may be highly treated and reused as reclaimed water. For some waste waters ecological approaches using reed bed systems such as constructed wetlands may be appropriate. Modern systems include tertiary treatment by micro filtration or synthetic membranes. After membrane filtration, the treated wastewater is indistinguishable from waters of natural origin of drinking quality. Nitrates can be removed from wastewater by microbial denitrification, for which a small amount of methanol is typically added to provide the bacteria with a source of carbon. Ozone Waste Water Treatment is also growing in popularity, and requires the use of an ozone generator, which decontaminates the water as Ozone bubbles percolate through the tank.

Disposal of wastewaters from an industrial plant is a difficult and costly problem. Most petroleum refineries, chemical and petrochemical plants have onsite facilities to treat their wastewaters so that the pollutant concentrations in the treated wastewater comply with the local and/or national regulations regarding disposal of wastewaters into community treatment plants or into rivers, lakes or oceans.